In [1]:
# Parameters
data_name = "Tfap2b"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:43:59,145 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tfap2b: Motif: M08705_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tfap2b: #2

Cell typeModiscoHomer
Adipose;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0240519

Pattern: motif10.motif

Significance: 0.00982848

ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.01132

Pattern: motif13.motif

Significance: 0.0409092

Unique Cell types only TF-MoDISco finds Tfap2b: #42

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_21

Significance: 0.0371833

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_25

Significance: 0.0124429

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0123836

Absent
SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.054408500000000005

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_26

Significance: 0.0367426

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.0380435

/

Pattern: metacluster_1/pattern_26

Significance: 0.021155900000000002

Absent
A20;B-lymphoma;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0575295

/

Pattern: metacluster_1/pattern_8

Significance: 0.0508614

/

Pattern: metacluster_1/pattern_11

Significance: 0.031045299999999998

Absent
BSPHL;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0305166

Absent
MN1;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0405281

Absent
ROD_PHT_RCPTR_RTN;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0361184

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.059761

/

Pattern: metacluster_0/pattern_11

Significance: 0.05932130000000001

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.0481808

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.054998000000000005

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00711546

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0473654

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.0593786

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.054861099999999996

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.025717200000000003

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0388978

Absent
ES;MEF;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.051558400000000004

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.0422833

/

Pattern: metacluster_0/pattern_16

Significance: 0.035379400000000005

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0583868

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0094178

/

Pattern: metacluster_0/pattern_12

Significance: 0.0224775

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00192975

/

Pattern: metacluster_0/pattern_24

Significance: 0.0268284

/

Pattern: metacluster_0/pattern_27

Significance: 0.014791399999999998

Absent
testis;A;CL

Pattern: metacluster_0/pattern_6

Significance: 0.0490168

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.00917493

Absent
SPNL_CHRD;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.020047099999999998

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0456702

/

Pattern: metacluster_0/pattern_20

Significance: 0.059556899999999996

/

Pattern: metacluster_0/pattern_22

Significance: 0.0160948

/

Pattern: metacluster_0/pattern_23

Significance: 0.00116388

/

Pattern: metacluster_0/pattern_26

Significance: 0.0432071

Absent
pErythroblast;A;En

Pattern: metacluster_1/pattern_1

Significance: 0.0490005

Absent
eye-NRL_RTN;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.019572799999999998

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.028790499999999997

Absent
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0232557

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.040800199999999995

Absent
ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.049735800000000004

/

Pattern: metacluster_1/pattern_21

Significance: 0.011334200000000001

Absent
CH12_QNTPLE;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.048119999999999996

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.059732299999999995

/

Pattern: metacluster_1/pattern_21

Significance: 0.0208626

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.053634400000000006

/

Pattern: metacluster_1/pattern_17

Significance: 0.00438116

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0425594

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_20

Significance: 0.0046767

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.041988300000000006

/

Pattern: metacluster_0/pattern_20

Significance: 0.05591

/

Pattern: metacluster_0/pattern_21

Significance: 0.0208304

/

Pattern: metacluster_0/pattern_24

Significance: 0.046422000000000005

/

Pattern: metacluster_0/pattern_28

Significance: 0.013073900000000001

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.050669900000000004

/

Pattern: metacluster_0/pattern_14

Significance: 0.010746200000000001

/

Pattern: metacluster_0/pattern_19

Significance: 0.0513052

/

Pattern: metacluster_0/pattern_26

Significance: 0.044103699999999996

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.058105399999999995

Absent
No Cell types only Homer finds Tfap2b