In [1]:
# Parameters
data_name = "Six1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:34:20,308 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Six1: Motif: M09579_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Six1: #4

Cell typeModiscoHomer
SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_10

Significance: 1.4155899999999999e-08

Pattern: motif9.motif

Significance: 1.15577e-07

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 2.00803e-09

Pattern: motif6.motif

Significance: 0.000171893

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 1.11733e-08

Pattern: motif4.motif

Significance: 2.1605500000000002e-05

Muscle;A;CL

Pattern: metacluster_1/pattern_3

Significance: 1.92324e-09

Pattern: motif10.motif

Significance: 9.77936e-05

Unique Cell types only TF-MoDISco finds Six1: #58

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_10

Significance: 1.9624000000000002e-07

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 4.4717300000000003e-07

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_10

Significance: 6.63763e-07

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_9

Significance: 8.3262e-09

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 5.60501e-08

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_20

Significance: 4.92491e-06

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_20

Significance: 3.5565599999999996e-09

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_19

Significance: 4.14447e-11

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_19

Significance: 2.65249e-07

Absent
ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 7.22178e-07

Absent
3T3-L1;D;En

Pattern: metacluster_1/pattern_15

Significance: 1.07155e-08

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 4.2002499999999995e-08

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 2.7804299999999997e-09

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 1.2506e-08

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 2.17849e-07

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 2.173e-08

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 2.68602e-08

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 2.6614099999999993e-10

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 8.79117e-09

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 3.79511e-08

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 3.56438e-05

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 1.99381e-08

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 2.19858e-07

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 4.34844e-09

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_22

Significance: 1.6611699999999998e-07

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_20

Significance: 1.78301e-06

Absent
ES;MEF;A;CL

Pattern: metacluster_1/pattern_19

Significance: 4.2913299999999995e-09

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 2.32735e-08

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 7.34581e-07

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00055951

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 1.1076799999999999e-06

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_19

Significance: 4.28662e-07

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 5.1320500000000004e-05

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 1.4890399999999999e-06

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_17

Significance: 2.6668599999999997e-08

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_21

Significance: 2.95108e-05

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 2.12279e-08

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_19

Significance: 3.3363799999999996e-07

Absent
416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_18

Significance: 4.0406e-06

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_20

Significance: 1.57081e-05

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_22

Significance: 2.9771799999999996e-08

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_22

Significance: 2.17871e-05

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0007105319999999999

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 1.8704e-07

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_18

Significance: 6.87527e-09

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 1.2907600000000002e-08

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_16

Significance: 7.93029e-06

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 1.83568e-06

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00016411

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 6.0197900000000005e-06

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 3.03661e-05

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_18

Significance: 9.80564e-05

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_20

Significance: 0.019029

Absent
416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_17

Significance: 1.6419799999999998e-06

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_14

Significance: 2.78319e-10

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.054044100000000005

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_25

Significance: 8.078560000000001e-05

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_22

Significance: 6.6180200000000005e-06

Absent
Unique Cell types only Homer finds Six1: #1

Cell typeModiscoHomer
ISP;A;CLAbsent

Pattern: motif22.motif

Significance: 0.058660199999999996