In [1]:
# Parameters
data_name = "Nhlh1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:23:17,657 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nhlh1: Motif: M08773_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nhlh1: #2

Cell typeModiscoHomer
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00724151

Pattern: motif9.motif

Significance: 0.00716744

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.012340100000000001

Pattern: motif9.motif

Significance: 0.028002199999999998

Unique Cell types only TF-MoDISco finds Nhlh1: #33

Cell typeModiscoHomer
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.020959099999999998

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0044676

Absent
prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.0277177

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.051625800000000006

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00895119

/

Pattern: metacluster_1/pattern_18

Significance: 0.0480864

Absent
3T3-L1;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.0453983

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.036463699999999995

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0438898

Absent
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.029512599999999996

/

Pattern: metacluster_1/pattern_18

Significance: 0.0599423

/

Pattern: metacluster_1/pattern_20

Significance: 0.0588131

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0107727

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00487649

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00537982

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.034707800000000004

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00490345

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0433283

Absent
wES;GRM;E16.5;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0330249

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0247367

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0500631

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.0183674

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0137314

Absent
eye-NRL_RTN;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.0396307

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.00641986

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.0573702

Absent
aB;CD180;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.0409208

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.038207599999999994

Absent
aB_LPS+IL4+Oligomycin_24h;A;CL

Pattern: metacluster_1/pattern_25

Significance: 0.049591699999999996

Absent
CH12_QNTPLE;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.048119999999999996

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00447077

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0387522

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.058850400000000004

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.040611400000000006

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.011650399999999998

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0373907

Absent
Unique Cell types only Homer finds Nhlh1: #4

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.0501649

npES;5th_Rhmbmr_delA;E8.5;A;GEOAbsent

Pattern: motif2.motif

Significance: 0.0458701

wES;MSDRM;E11.5;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0491578

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.0297645