Index of /kundaje/marinovg/oak/papers/2023_ZNFs/2023-09-01-final-figures

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]2022-05-25-files-for-BP/2022-05-26 02:37 -  
[DIR]2024-12-16-motifs/2024-12-16 23:26 -  
[DIR]2024-12-17-dataset-overlap/2024-12-17 00:09 -  
[TXT]2025-05-16-motif-alignment-stats-V2.tsv2025-05-20 03:07 36K 
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[TXT]2025-05-16-motif-alignment-stats-V2.tsv.GLI2025-05-20 03:07 331  
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[TXT]2025-05-16-motif-alignment-stats-V2.tsv.GLI.hist.motLen-hist2025-05-20 03:12 22  
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[TXT]2025-05-16-motif-alignment-stats-V2.tsv.SP.hist.motLen-hist2025-05-20 03:12 14  
[ ]2025-05-17-ZNFs-GKM_V1-list-of-supplemental-figures2025-05-20 01:21 128K 
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[ ]2025-05-20.nummotifs-TF_type.files2025-05-20 03:25 271  
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[ ]2025-05-20.nummotifs-TF_type.hist.table2025-05-20 03:33 226  
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[DIR]2025-08-05-SVG-for-Chang/2025-08-06 07:45 -  
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[TXT]FIMO-gzip.sh2023-11-08 04:40 3.7M 
[TXT]FIMO-gzip2-mean_shap_fixed.sh2024-10-14 19:15 2.6M 
[TXT]FIMO-gzip2-trim20_30.sh2025-03-16 04:14 10M 
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[TXT]FIMO-vs-RM.sh2023-11-08 05:21 5.0M 
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[TXT]Logomaker-B1H-2.sh2024-01-21 04:31 143K 
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[TXT]Logomaker-TFMoDiSCO_FIMO-trim20_30.sh2025-03-16 02:35 24M 
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[TXT]Logomaker-TFMoDiSCOtoMEME.sh2023-12-13 00:52 3.2M 
[TXT]PFAM-scan-convert-to-tab.sh2023-11-07 02:55 2.3M 
[TXT]PFAM-scan-convert-to-tab2.sh2024-01-14 16:21 313K 
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[TXT]RCADE-commands-for-Abhi.sh2023-09-12 04:53 766K 
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[TXT]TFMoDiSCO_FIMO-CWM-trim20_30.sh2025-03-16 02:16 16M 
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[TXT]TFMoDiSCO_FIMO-PWM-CL.sh2024-01-26 05:23 3.4M 
[TXT]TFMoDiSCO_FIMO-PWM-gzip.sh2024-01-26 05:06 1.6M 
[TXT]TFMoDiSCO_FIMO-PWM-intersects-repeats-clean-up.sh2024-01-26 05:16 5.5M 
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[TXT]TFMoDiSCO_FIMO-PWM-trim20_30-CL.sh2025-03-16 02:25 10M 
[TXT]TFMoDiSCO_FIMO-PWM-trim20_30-gzip.sh2025-03-16 02:23 5.0M 
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[TXT]TFMoDiSCO_FIMO-PWM-trim20_30.sh2025-03-16 02:16 16M 
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[TXT]TFMoDiSCO_FIMO-PWM.line_counts.sh2024-01-26 05:25 4.4M 
[TXT]TFMoDiSCO_FIMO-PWM.sh2024-01-23 01:32 5.5M 
[TXT]TFMoDiSCO_FIMO-ZNF-GR-NB-PWM-CL-mean_shap_fixed.sh2024-10-15 10:57 479K 
[TXT]TFMoDiSCO_FIMO-ZNF-GR-NB-PWM-CL-test_encode_fold0.sh2024-09-15 23:01 870K 
[TXT]TFMoDiSCO_FIMO-ZNF-GR-NB-PWM-CL.sh2024-04-05 07:24 753K 
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[TXT]TFMoDiSCO_FIMO-ZNF-GR-NB-PWM-gzip.sh2024-04-05 07:22 360K 
[ ]TFMoDiSCO_FIMO-ZNF-GR-NB-PWM-mean_shap_fixed.line_counts2024-10-15 11:22 236K 
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[TXT]TFMoDiSCO_FIMO-ZNF-GR-NB-PWM.line_counts.sh2024-04-09 23:41 1.0M 
[TXT]TFMoDiSCO_FIMO.sh2023-11-06 18:52 4.3M 
[TXT]TFMoDiSCOtoMEME-FIMO-ZNF-GR-NB-CWM.sh2024-04-03 15:06 1.2M 
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[TXT]TFMoDiSCOtoMEME-FIMO-ZNF-GR-NB-test_encode_fold0-PWM.sh2024-09-15 04:44 1.2M 
[TXT]TFMoDiSCOtoMEME-ZNF-GR-NB.sh2024-04-02 15:11 98K 
[DIR]TFMoDiSCOtoMEME-files-2-FIMO-CWM/2024-01-23 01:29 -  
[TXT]TFMoDiSCOtoMEME-files-2-FIMO-PWM-vs-peak_calls-intersect.sh2024-04-11 02:12 7.3M 
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[ ]TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed.config2024-10-14 22:30 217K 
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[DIR]TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0-FIMO-CWM/2024-09-11 21:07 -  
[TXT]TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0-FIMO-PWM.line_counts.sh2024-09-15 23:03 1.2M 
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[ ]TFMoDiSCOtoMEME-files-submotifs-1-first-pass.tar.gz2025-01-19 06:10 704M 
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[DIR]TFMoDiSCOtoMEME-files-trim20_flank5_0-FIMO-CWM/2025-03-16 00:51 -  
[DIR]TFMoDiSCOtoMEME-files-trim20_flank5_0-FIMO-PWM/2025-03-21 04:14 -  
[TXT]TFMoDiSCOtoMEME-files-trim20_flank5_0-submotifs.sh2025-05-16 23:25 242K 
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[ ]TFMoDiSCOtoMEME-files-trim20_flank5_0.config2025-03-16 04:57 1.6M 
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[TXT]TFMoDiSCOtoMEME-files-trim20_flank5_10-submotifs.sh2025-05-16 23:25 262K 
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[TXT]TFMoDiSCOtoMEME-files-trim20_flank5_40-submotifs.sh2025-05-16 23:25 262K 
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