python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/AEBP2-HEK293-ENCSR769JRS.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/AEBP2-HEK293-ENCSR769JRS
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/BCL6B-HEK293-ENCSR673SGK.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/BCL6B-HEK293-ENCSR673SGK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/BCL6-HEK293-ENCSR673SGK.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/BCL6-HEK293-ENCSR673SGK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/BCL6-HepG2-ENCSR759BDG.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/BCL6-HepG2-ENCSR759BDG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/BCL6-K562-ENCSR802AHH.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/BCL6-K562-ENCSR802AHH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/BCL11A-GM12878-ENCSR000BHA.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/BCL11A-GM12878-ENCSR000BHA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/BCL11A-HEK293-ENCSR021DJC.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/BCL11A-HEK293-ENCSR021DJC
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/BCL11B-HEK293-ENCSR770PQN.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/BCL11B-HEK293-ENCSR770PQN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/CTCF-HEK293-Hughes_NB_models_CTCF.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/CTCF-HEK293-Hughes_NB_models_CTCF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/CTCFL-K562-ENCSR000BNK.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/CTCFL-K562-ENCSR000BNK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/DZIP1-HepG2-ENCSR895KNN.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/DZIP1-HepG2-ENCSR895KNN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/E4F1-GM12878-ENCSR439WAF.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/E4F1-GM12878-ENCSR439WAF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/E4F1-K562-ENCSR003GUC.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/E4F1-K562-ENCSR003GUC
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/E4F1-K562-ENCSR731LHZ.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/E4F1-K562-ENCSR731LHZ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/E4F1-MCF-7-ENCSR841YWU.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/E4F1-MCF-7-ENCSR841YWU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/EGR2-HEK293-ENCSR919CZU.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/EGR2-HEK293-ENCSR919CZU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GFI1B-HEK293-ENCSR445PDR.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/GFI1B-HEK293-ENCSR445PDR
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GFI1-HEK293-ENCSR445PDR.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/GFI1-HEK293-ENCSR445PDR
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GFI1-HepG2-ENCSR849FVL.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/GFI1-HepG2-ENCSR849FVL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GLI2-HEK293-ENCSR978EQY.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/GLI2-HEK293-ENCSR978EQY
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GLI4-HEK293-ENCSR211PZO.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/GLI4-HEK293-ENCSR211PZO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GLI4-HepG2-ENCSR502YME.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/GLI4-HepG2-ENCSR502YME
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GLIS1-HEK293-ENCSR482BBZ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/GLIS1-HEK293-ENCSR482BBZ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GLIS2-HEK293-ENCSR535DIA.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/GLIS2-HEK293-ENCSR535DIA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GTF3A-HepG2-ENCSR220AQM.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/GTF3A-HepG2-ENCSR220AQM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/GZF1-HepG2-ENCSR479WQX.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/GZF1-HepG2-ENCSR479WQX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/HIC1-HEK293-ENCSR803GYT.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/HIC1-HEK293-ENCSR803GYT
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/HINFP-HepG2-ENCSR621PAN.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/HINFP-HepG2-ENCSR621PAN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/HINFP-K562-ENCSR619GFP.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/HINFP-K562-ENCSR619GFP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/HIVEP1-HepG2-ENCSR697WMX.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/HIVEP1-HepG2-ENCSR697WMX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/HIVEP1-K562-ENCSR947PJZ.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/HIVEP1-K562-ENCSR947PJZ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF1-GM12878-ENCSR000EUJ.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/IKZF1-GM12878-ENCSR000EUJ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF1-GM12878-ENCSR441VHN.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/IKZF1-GM12878-ENCSR441VHN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF1-GM12878-ENCSR874AFU.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/IKZF1-GM12878-ENCSR874AFU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF1-HepG2-ENCSR278JQG.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/IKZF1-HepG2-ENCSR278JQG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF1-K562-ENCSR395HWC.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/IKZF1-K562-ENCSR395HWC
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF1-K562-ENCSR948VFL.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/IKZF1-K562-ENCSR948VFL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF2-GM12878-ENCSR680UQE.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/IKZF2-GM12878-ENCSR680UQE
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF2-GM12878-ENCSR822AHX.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/IKZF2-GM12878-ENCSR822AHX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF3-HEK293-ENCSR304AMN.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/IKZF3-HEK293-ENCSR304AMN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF4-HepG2-ENCSR799DUB.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/IKZF4-HepG2-ENCSR799DUB
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/IKZF5-HepG2-ENCSR210HBN.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/IKZF5-HepG2-ENCSR210HBN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/INSM2-HEK293-ENCSR382GSF.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/INSM2-HEK293-ENCSR382GSF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF1-HEK293-ENCSR006GAQ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/KLF1-HEK293-ENCSR006GAQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF1-K562-ENCSR550HCT.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/KLF1-K562-ENCSR550HCT
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF4-MCF-7-ENCSR265WJC.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/KLF4-MCF-7-ENCSR265WJC
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF5-GM12878-ENCSR974OFJ.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/KLF5-GM12878-ENCSR974OFJ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF6-HepG2-ENCSR757EKM.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/KLF6-HepG2-ENCSR757EKM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF6-K562-ENCSR297CGF.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/KLF6-K562-ENCSR297CGF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF7-HEK293-ENCSR604VWJ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/KLF7-HEK293-ENCSR604VWJ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF8-HEK293-ENCSR635NOQ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/KLF8-HEK293-ENCSR635NOQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF9-HEK293-ENCSR076EZB.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/KLF9-HEK293-ENCSR076EZB
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF9-HepG2-ENCSR938ETG.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/KLF9-HepG2-ENCSR938ETG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF9-MCF-7-ENCSR125ZYC.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/KLF9-MCF-7-ENCSR125ZYC
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF10-HEK293-ENCSR006GAQ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/KLF10-HEK293-ENCSR006GAQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF10-K562-ENCSR121SPB.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/KLF10-K562-ENCSR121SPB
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF12-HepG2-ENCSR552YWL.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/KLF12-HepG2-ENCSR552YWL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF13-HepG2-ENCSR756SZU.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/KLF13-HepG2-ENCSR756SZU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF13-K562-ENCSR608HVP.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/KLF13-K562-ENCSR608HVP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF15-HepG2-ENCSR860ONE.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/KLF15-HepG2-ENCSR860ONE
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF16-HEK293-ENCSR397DQC.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/KLF16-HEK293-ENCSR397DQC
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF16-HepG2-ENCSR009KLQ.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/KLF16-HepG2-ENCSR009KLQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF16-HepG2-ENCSR913KJZ.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/KLF16-HepG2-ENCSR913KJZ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF16-K562-ENCSR760UVO.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/KLF16-K562-ENCSR760UVO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/KLF17-HEK293-ENCSR065WUF.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/KLF17-HEK293-ENCSR065WUF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-A549-ENCSR636YLV.peaks_inliers.bed.gz 0 chromHMM-A549-ENCFF418WHV.bed.gz 0 chromHMM-intersects-2/MAZ-A549-ENCSR636YLV
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-GM12878-ENCSR000DZA.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/MAZ-GM12878-ENCSR000DZA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-GM12878-ENCSR903MVU.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/MAZ-GM12878-ENCSR903MVU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-HEK293-ENCSR290SSQ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/MAZ-HEK293-ENCSR290SSQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-HeLa-S3-ENCSR000ECL.peaks_inliers.bed.gz 0 chromHMM-HeLa-S3-ENCFF863UQD.bed.gz 0 chromHMM-intersects-2/MAZ-HeLa-S3-ENCSR000ECL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-HepG2-ENCSR000EDN.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/MAZ-HepG2-ENCSR000EDN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-HepG2-ENCSR700PNE.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/MAZ-HepG2-ENCSR700PNE
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-K562-ENCSR000EFX.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/MAZ-K562-ENCSR000EFX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-K562-ENCSR163IUV.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/MAZ-K562-ENCSR163IUV
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-K562-ENCSR643JRH.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/MAZ-K562-ENCSR643JRH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MAZ-MCF-7-ENCSR288IJC.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/MAZ-MCF-7-ENCSR288IJC
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MTF1-HepG2-ENCSR194NVP.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/MTF1-HepG2-ENCSR194NVP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MTF1-K562-ENCSR849LXI.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/MTF1-K562-ENCSR849LXI
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MYNN-HEK293-ENCSR707BNG.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/MYNN-HEK293-ENCSR707BNG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MYNN-HepG2-ENCSR398TMP.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/MYNN-HepG2-ENCSR398TMP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MYNN-K562-ENCSR307YJU.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/MYNN-K562-ENCSR307YJU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MYNN-K562-ENCSR737LTZ.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/MYNN-K562-ENCSR737LTZ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MYNN-K562-ENCSR992KLV.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/MYNN-K562-ENCSR992KLV
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MZF1-HEK293-ENCSR298QUH.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/MZF1-HEK293-ENCSR298QUH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/MZF1-HepG2-ENCSR384YOP.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/MZF1-HepG2-ENCSR384YOP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/OSR2-HEK293-ENCSR324LTM.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/OSR2-HEK293-ENCSR324LTM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/OVOL1-MCF-7-ENCSR829WBA.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/OVOL1-MCF-7-ENCSR829WBA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/OVOL3-HEK293-ENCSR768LIO.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/OVOL3-HEK293-ENCSR768LIO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PATZ1-HEK293-ENCSR966ULI.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/PATZ1-HEK293-ENCSR966ULI
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PATZ1-HepG2-ENCSR658YLN.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/PATZ1-HepG2-ENCSR658YLN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PATZ1-K562-ENCSR549PVK.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/PATZ1-K562-ENCSR549PVK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PATZ1-SK-N-SH-ENCSR969AIM.peaks_inliers.bed.gz 0 chromHMM-SK-N-SH-ENCFF733JNJ.bed.gz 0 chromHMM-intersects-2/PATZ1-SK-N-SH-ENCSR969AIM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM1-A549-ENCSR977FEF.peaks_inliers.bed.gz 0 chromHMM-A549-ENCFF418WHV.bed.gz 0 chromHMM-intersects-2/PRDM1-A549-ENCSR977FEF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM1-HEK293-ENCSR098YLE.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/PRDM1-HEK293-ENCSR098YLE
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM1-HeLa-S3-ENCSR000ECY.peaks_inliers.bed.gz 0 chromHMM-HeLa-S3-ENCFF863UQD.bed.gz 0 chromHMM-intersects-2/PRDM1-HeLa-S3-ENCSR000ECY
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM2-HEK293-ENCSR714LYA.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/PRDM2-HEK293-ENCSR714LYA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM4-HEK293-ENCSR443MVV.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/PRDM4-HEK293-ENCSR443MVV
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM4-HepG2-ENCSR130NZQ.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/PRDM4-HepG2-ENCSR130NZQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM6-HEK293-ENCSR892QHR.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/PRDM6-HEK293-ENCSR892QHR
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM10-HEK293-ENCSR223TAV.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/PRDM10-HEK293-ENCSR223TAV
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM10-HepG2-ENCSR289PSX.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/PRDM10-HepG2-ENCSR289PSX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM10-K562-ENCSR120MPG.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/PRDM10-K562-ENCSR120MPG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM15-GM12878-ENCSR748SQL.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/PRDM15-GM12878-ENCSR748SQL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM15-HepG2-ENCSR011INW.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/PRDM15-HepG2-ENCSR011INW
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/PRDM15-WTC11-ENCSR092DCD.peaks_inliers.bed.gz 0 chromHMM-WTC11-ENCFF325BZH.bed.gz 0 chromHMM-intersects-2/PRDM15-WTC11-ENCSR092DCD
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/RBAK-HEK293-ENCSR441UBA.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/RBAK-HEK293-ENCSR441UBA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/RBAK-HepG2-ENCSR144NTH.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/RBAK-HepG2-ENCSR144NTH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REPIN1-HEK293-ENCSR146NLL.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/REPIN1-HEK293-ENCSR146NLL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REPIN1-HepG2-ENCSR893BAO.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/REPIN1-HepG2-ENCSR893BAO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-A549-ENCSR000BQP.peaks_inliers.bed.gz 0 chromHMM-A549-ENCFF418WHV.bed.gz 0 chromHMM-intersects-2/REST-A549-ENCSR000BQP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-A549-ENCSR892DRK.peaks_inliers.bed.gz 0 chromHMM-A549-ENCFF418WHV.bed.gz 0 chromHMM-intersects-2/REST-A549-ENCSR892DRK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-GM12878-ENCSR000BGF.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/REST-GM12878-ENCSR000BGF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-GM12878-ENCSR000BQS.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/REST-GM12878-ENCSR000BQS
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-H1-ENCSR000BHM.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/REST-H1-ENCSR000BHM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-HEK293-ENCSR896UBV.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/REST-HEK293-ENCSR896UBV
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-HepG2-ENCSR000BJL.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/REST-HepG2-ENCSR000BJL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-HepG2-ENCSR000BOT.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/REST-HepG2-ENCSR000BOT
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-K562-ENCSR000ATM.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/REST-K562-ENCSR000ATM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-K562-ENCSR000BMW.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/REST-K562-ENCSR000BMW
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-K562-ENCSR054JMQ.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/REST-K562-ENCSR054JMQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-K562-ENCSR137ZMQ.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/REST-K562-ENCSR137ZMQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-liver-ENCSR893QWP.peaks_inliers.bed.gz 0 chromHMM-liver-ENCFF246AMW.bed.gz 0 chromHMM-intersects-2/REST-liver-ENCSR893QWP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/REST-MCF-7-ENCSR000BSP.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/REST-MCF-7-ENCSR000BSP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/RLF-K562-ENCSR718SDE.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/RLF-K562-ENCSR718SDE
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/RREB1-HepG2-ENCSR180MUU.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/RREB1-HepG2-ENCSR180MUU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/RREB1-K562-ENCSR250WFW.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/RREB1-K562-ENCSR250WFW
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SALL2-HEK293-ENCSR044FMM.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/SALL2-HEK293-ENCSR044FMM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SALL2-HepG2-ENCSR062TDX.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SALL2-HepG2-ENCSR062TDX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SCRT1-HEK293-ENCSR605MGM.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/SCRT1-HEK293-ENCSR605MGM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SCRT2-HEK293-ENCSR338DGO.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/SCRT2-HEK293-ENCSR338DGO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SNAI1-HepG2-ENCSR188EMJ.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SNAI1-HepG2-ENCSR188EMJ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-A549-ENCSR000BPE.peaks_inliers.bed.gz 0 chromHMM-A549-ENCFF418WHV.bed.gz 0 chromHMM-intersects-2/SP1-A549-ENCSR000BPE
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-GM12878-ENCSR000BHK.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/SP1-GM12878-ENCSR000BHK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-H1-ENCSR000BIR.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/SP1-H1-ENCSR000BIR
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-HEK293T-ENCSR906PEI.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/SP1-HEK293T-ENCSR906PEI
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-HepG2-ENCSR000BJX.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SP1-HepG2-ENCSR000BJX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-HepG2-ENCSR334KIQ.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SP1-HepG2-ENCSR334KIQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-HepG2-ENCSR460YAM.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SP1-HepG2-ENCSR460YAM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-K562-ENCSR000BKO.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/SP1-K562-ENCSR000BKO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-K562-ENCSR372IML.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/SP1-K562-ENCSR372IML
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-liver-ENCSR085IXF.peaks_inliers.bed.gz 0 chromHMM-liver-ENCFF246AMW.bed.gz 0 chromHMM-intersects-2/SP1-liver-ENCSR085IXF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-liver-ENCSR386YIH.peaks_inliers.bed.gz 0 chromHMM-liver-ENCFF246AMW.bed.gz 0 chromHMM-intersects-2/SP1-liver-ENCSR386YIH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-MCF-7-ENCSR729LGA.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/SP1-MCF-7-ENCSR729LGA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP1-WTC11-ENCSR583CGO.peaks_inliers.bed.gz 0 chromHMM-WTC11-ENCFF325BZH.bed.gz 0 chromHMM-intersects-2/SP1-WTC11-ENCSR583CGO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP2-H1-ENCSR000BQG.peaks_inliers.bed.gz 0 chromHMM-WTC11-ENCFF325BZH.bed.gz 0 chromHMM-intersects-2/SP2-H1-ENCSR000BQG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP2-HEK293-ENCSR807LQP.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/SP2-HEK293-ENCSR807LQP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP2-HepG2-ENCSR000BOU.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SP2-HepG2-ENCSR000BOU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP2-HepG2-ENCSR946RZN.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SP2-HepG2-ENCSR946RZN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP2-K562-ENCSR000BNL.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/SP2-K562-ENCSR000BNL
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP3-HEK293-ENCSR141PZA.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/SP3-HEK293-ENCSR141PZA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP4-H1-ENCSR000BQV.peaks_inliers.bed.gz 0 chromHMM-WTC11-ENCFF325BZH.bed.gz 0 chromHMM-intersects-2/SP4-H1-ENCSR000BQV
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP4-HepG2-ENCSR642PQK.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SP4-HepG2-ENCSR642PQK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP5-HepG2-ENCSR019NPF.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/SP5-HepG2-ENCSR019NPF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/SP7-HEK293-ENCSR468IJT.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/SP7-HEK293-ENCSR468IJT
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/TRERF1-WTC11-ENCSR547WSB.peaks_inliers.bed.gz 0 chromHMM-WTC11-ENCFF325BZH.bed.gz 0 chromHMM-intersects-2/TRERF1-WTC11-ENCSR547WSB
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/TSHZ1-HEK293-ENCSR958JPH.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/TSHZ1-HEK293-ENCSR958JPH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/TSHZ1-K562-ENCSR958JPH.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/TSHZ1-K562-ENCSR958JPH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/WIZ-HepG2-ENCSR434ZNS.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/WIZ-HepG2-ENCSR434ZNS
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/WT1-HEK293-ENCSR966PJJ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/WT1-HEK293-ENCSR966PJJ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-A549-ENCSR000BPM.peaks_inliers.bed.gz 0 chromHMM-A549-ENCFF418WHV.bed.gz 0 chromHMM-intersects-2/YY1-A549-ENCSR000BPM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-GM12878-ENCSR000BNP.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/YY1-GM12878-ENCSR000BNP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-GM12878-ENCSR000EUM.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/YY1-GM12878-ENCSR000EUM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-GM12891-ENCSR000BKJ.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/YY1-GM12891-ENCSR000BKJ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-GM12892-ENCSR000BLT.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/YY1-GM12892-ENCSR000BLT
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-HEK293-ENCSR859RAO.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/YY1-HEK293-ENCSR859RAO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-HepG2-ENCSR000BNT.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/YY1-HepG2-ENCSR000BNT
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-K562-ENCSR000BKU.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/YY1-K562-ENCSR000BKU
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-K562-ENCSR000BMH.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/YY1-K562-ENCSR000BMH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-K562-ENCSR000EWF.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/YY1-K562-ENCSR000EWF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-liver-ENCSR382MOM.peaks_inliers.bed.gz 0 chromHMM-liver-ENCFF246AMW.bed.gz 0 chromHMM-intersects-2/YY1-liver-ENCSR382MOM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-liver-ENCSR994YLZ.peaks_inliers.bed.gz 0 chromHMM-liver-ENCFF246AMW.bed.gz 0 chromHMM-intersects-2/YY1-liver-ENCSR994YLZ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-SK-N-SH-ENCSR000BLZ.peaks_inliers.bed.gz 0 chromHMM-SK-N-SH-ENCFF733JNJ.bed.gz 0 chromHMM-intersects-2/YY1-SK-N-SH-ENCSR000BLZ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY1-SK-N-SH-ENCSR000BSM.peaks_inliers.bed.gz 0 chromHMM-SK-N-SH-ENCFF733JNJ.bed.gz 0 chromHMM-intersects-2/YY1-SK-N-SH-ENCSR000BSM
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/YY2-HEK293-ENCSR692HSE.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/YY2-HEK293-ENCSR692HSE
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBED1-GM12878-ENCSR207PFI.peaks_inliers.bed.gz 0 chromHMM-GM12878-ENCFF338RIC.bed.gz 0 chromHMM-intersects-2/ZBED1-GM12878-ENCSR207PFI
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBED1-K562-ENCSR286PCG.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/ZBED1-K562-ENCSR286PCG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBED4-HepG2-ENCSR409PMR.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZBED4-HepG2-ENCSR409PMR
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBED4-HepG2-ENCSR409PMR.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZBED4-HepG2-ENCSR409PMR
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB1-HEK293-ENCSR927UJQ.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/ZBTB1-HEK293-ENCSR927UJQ
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB1-HepG2-ENCSR331HWO.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZBTB1-HepG2-ENCSR331HWO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB1-K562-ENCSR166BAY.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/ZBTB1-K562-ENCSR166BAY
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB1-MCF-7-ENCSR309ELI.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/ZBTB1-MCF-7-ENCSR309ELI
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB7A-HEK293-ENCSR773REP.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/ZBTB7A-HEK293-ENCSR773REP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB7A-HepG2-ENCSR000BQA.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZBTB7A-HepG2-ENCSR000BQA
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB7A-HepG2-ENCSR850YDX.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZBTB7A-HepG2-ENCSR850YDX
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZBTB7A-K562-ENCSR000BME.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/ZBTB7A-K562-ENCSR000BME
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZFX-HEK293T-ENCSR218GSN.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/ZFX-HEK293T-ENCSR218GSN
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZFX-HepG2-ENCSR266HHO.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZFX-HepG2-ENCSR266HHO
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZFX-K562-ENCSR628DJK.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/ZFX-K562-ENCSR628DJK
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZFX-K562-ENCSR920ASP.peaks_inliers.bed.gz 0 chromHMM-K562-ENCFF963KIA.bed.gz 0 chromHMM-intersects-2/ZFX-K562-ENCSR920ASP
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZFX-MCF-7-ENCSR435OQD.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/ZFX-MCF-7-ENCSR435OQD
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF205-HEK382-ChipExo_models_ZNF205.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/ZNF205-HEK382-ChipExo_models_ZNF205
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF334-HEK437-ChipExo_models_ZNF334.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/ZNF334-HEK437-ChipExo_models_ZNF334
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF335-HepG2-ENCSR432QMW.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZNF335-HepG2-ENCSR432QMW
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF528-HEK504-Hughes_GR_models_ZNF528.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/ZNF528-HEK504-Hughes_GR_models_ZNF528
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF579-MCF-7-ENCSR018MQH.peaks_inliers.bed.gz 0 chromHMM-MCF-7-ENCFF506GEX.bed.gz 0 chromHMM-intersects-2/ZNF579-MCF-7-ENCSR018MQH
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF703-HepG2-ENCSR400JHG.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZNF703-HepG2-ENCSR400JHG
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF768-HEK293-ENCSR070HWF.peaks_inliers.bed.gz 0 chromHMM-HEK293-ENCFF476TTU.bed.gz 0 chromHMM-intersects-2/ZNF768-HEK293-ENCSR070HWF
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py peak-calls-2/ZNF768-HepG2-ENCSR181ABP.peaks_inliers.bed.gz 0 chromHMM-HepG2-ENCFF808IZE.bed.gz 0 chromHMM-intersects-2/ZNF768-HepG2-ENCSR181ABP