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bash RC.sh gencode.v29/ATF2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.fa
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bash RC.sh gencode.v29/DZIP1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.fa
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bash RC.sh gencode.v29/HINFP-211 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.fa
bash RC.sh gencode.v29/HINFP-212 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.fa
bash RC.sh gencode.v29/HINFP-213 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.fa
bash RC.sh gencode.v29/HINFP-214 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.fa
bash RC.sh gencode.v29/HIVEP1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.fa
bash RC.sh gencode.v29/HIVEP1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.fa
bash RC.sh gencode.v29/HIVEP1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.fa
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bash RC.sh gencode.v29/HIVEP1-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.fa
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bash RC.sh gencode.v29/HKR1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.fa
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bash RC.sh gencode.v29/HKR1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.fa
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bash RC.sh gencode.v29/HKR1-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.fa
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bash RC.sh gencode.v29/IKZF4-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.fa
bash RC.sh gencode.v29/IKZF4-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.fa
bash RC.sh gencode.v29/IKZF4-211 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.fa
bash RC.sh gencode.v29/IKZF4-212 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.fa
bash RC.sh gencode.v29/IKZF4-213 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.fa
bash RC.sh gencode.v29/IKZF5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.fa
bash RC.sh gencode.v29/IKZF5-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.fa
bash RC.sh gencode.v29/IKZF5-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.fa
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bash RC.sh gencode.v29/IKZF5-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.fa
bash RC.sh gencode.v29/INSM2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.fa
bash RC.sh gencode.v29/KLF10-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.fa
bash RC.sh gencode.v29/KLF10-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.fa
bash RC.sh gencode.v29/KLF1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.fa
bash RC.sh gencode.v29/KLF12-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.fa
bash RC.sh gencode.v29/KLF12-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.fa
bash RC.sh gencode.v29/KLF13-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.fa
bash RC.sh gencode.v29/KLF13-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.fa
bash RC.sh gencode.v29/KLF13-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.fa
bash RC.sh gencode.v29/KLF13-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.fa
bash RC.sh gencode.v29/KLF13-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.fa
bash RC.sh gencode.v29/KLF13-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.fa
bash RC.sh gencode.v29/KLF14-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.fa
bash RC.sh gencode.v29/KLF15-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.fa
bash RC.sh gencode.v29/KLF15-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.fa
bash RC.sh gencode.v29/KLF16-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.fa
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bash RC.sh gencode.v29/KLF16-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.fa
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bash RC.sh gencode.v29/KLF17-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.fa
bash RC.sh gencode.v29/KLF4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.fa
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bash RC.sh gencode.v29/KLF4-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.fa
bash RC.sh gencode.v29/KLF4-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.fa
bash RC.sh gencode.v29/KLF4-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.fa
bash RC.sh gencode.v29/KLF4-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.fa
bash RC.sh gencode.v29/KLF5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.fa
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bash RC.sh gencode.v29/KLF6-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.fa
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bash RC.sh gencode.v29/KLF7-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.fa
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bash RC.sh gencode.v29/KLF8-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.fa
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bash RC.sh gencode.v29/MAZ-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.fa
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bash RC.sh gencode.v29/OSR2-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.fa
bash RC.sh gencode.v29/OSR2-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.fa
bash RC.sh gencode.v29/OVOL1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.fa
bash RC.sh gencode.v29/OVOL1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.fa
bash RC.sh gencode.v29/OVOL1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.fa
bash RC.sh gencode.v29/OVOL3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.fa
bash RC.sh gencode.v29/OVOL3-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.fa
bash RC.sh gencode.v29/PATZ1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.fa
bash RC.sh gencode.v29/PATZ1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.fa
bash RC.sh gencode.v29/PATZ1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.fa
bash RC.sh gencode.v29/PATZ1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.fa
bash RC.sh gencode.v29/PATZ1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.fa
bash RC.sh gencode.v29/PATZ1-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.fa
bash RC.sh gencode.v29/PRDM10-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.fa
bash RC.sh gencode.v29/PRDM10-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.fa
bash RC.sh gencode.v29/PRDM10-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.fa
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bash RC.sh gencode.v29/PRDM10-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.fa
bash RC.sh gencode.v29/PRDM10-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.fa
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bash RC.sh gencode.v29/PRDM1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.fa
bash RC.sh gencode.v29/PRDM1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.fa
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bash RC.sh gencode.v29/PRDM15-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.fa
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bash RC.sh gencode.v29/PRDM2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.fa
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bash RC.sh gencode.v29/REST-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.fa
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bash RC.sh gencode.v29/RLF-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.fa
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bash RC.sh gencode.v29/RREB1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.fa
bash RC.sh gencode.v29/RREB1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.fa
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bash RC.sh gencode.v29/SALL2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.fa
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bash RC.sh gencode.vM20/Bcl11a-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bcl11a-201.fa
bash RC.sh gencode.vM20/Bcl11a-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bcl11a-202.fa
bash RC.sh gencode.vM20/Bcl11b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bcl11b-201.fa
bash RC.sh gencode.vM20/Bcl11b-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bcl11b-202.fa
bash RC.sh gencode.vM20/Bcl11b-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bcl11b-203.fa
bash RC.sh gencode.vM20/Bcl6-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bcl6-201.fa
bash RC.sh gencode.vM20/Bcl6b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bcl6b-201.fa
bash RC.sh gencode.vM20/Bnc1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bnc1-201.fa
bash RC.sh gencode.vM20/Bnc2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bnc2-201.fa
bash RC.sh gencode.vM20/Bnc2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bnc2-202.fa
bash RC.sh gencode.vM20/Bnc2-214 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bnc2-214.fa
bash RC.sh gencode.vM20/Bnc2-215 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Bnc2-215.fa
bash RC.sh gencode.vM20/CAAA01141682.1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/CAAA01141682.1-203.fa
bash RC.sh gencode.vM20/Ciz1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ciz1-201.fa
bash RC.sh gencode.vM20/Ciz1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ciz1-202.fa
bash RC.sh gencode.vM20/Ciz1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ciz1-203.fa
bash RC.sh gencode.vM20/Ciz1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ciz1-204.fa
bash RC.sh gencode.vM20/Ciz1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ciz1-205.fa
bash RC.sh gencode.vM20/CT009594.2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/CT009594.2-201.fa
bash RC.sh gencode.vM20/CT010433.2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/CT010433.2-201.fa
bash RC.sh gencode.vM20/Ctcf-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ctcf-201.fa
bash RC.sh gencode.vM20/Ctcf-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ctcf-204.fa
bash RC.sh gencode.vM20/Ctcfl-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ctcfl-201.fa
bash RC.sh gencode.vM20/Ctcfl-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ctcfl-202.fa
bash RC.sh gencode.vM20/D3Ertd254e-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/D3Ertd254e-201.fa
bash RC.sh gencode.vM20/D3Ertd254e-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/D3Ertd254e-202.fa
bash RC.sh gencode.vM20/Dnajc21-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Dnajc21-201.fa
bash RC.sh gencode.vM20/Dnajc21-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Dnajc21-202.fa
bash RC.sh gencode.vM20/E430018J23Rik-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E430018J23Rik-201.fa
bash RC.sh gencode.vM20/E430018J23Rik-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E430018J23Rik-203.fa
bash RC.sh gencode.vM20/E4f1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E4f1-201.fa
bash RC.sh gencode.vM20/E4f1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E4f1-202.fa
bash RC.sh gencode.vM20/E4f1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E4f1-204.fa
bash RC.sh gencode.vM20/E4f1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E4f1-205.fa
bash RC.sh gencode.vM20/E4f1-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E4f1-207.fa
bash RC.sh gencode.vM20/E4f1-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/E4f1-208.fa
bash RC.sh gencode.vM20/Egr1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr1-201.fa
bash RC.sh gencode.vM20/Egr1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr1-202.fa
bash RC.sh gencode.vM20/Egr2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr2-201.fa
bash RC.sh gencode.vM20/Egr2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr2-202.fa
bash RC.sh gencode.vM20/Egr2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr2-203.fa
bash RC.sh gencode.vM20/Egr3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr3-201.fa
bash RC.sh gencode.vM20/Egr3-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr3-202.fa
bash RC.sh gencode.vM20/Egr3-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr3-204.fa
bash RC.sh gencode.vM20/Egr4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Egr4-201.fa
bash RC.sh gencode.vM20/Esco1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco1-201.fa
bash RC.sh gencode.vM20/Esco1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco1-202.fa
bash RC.sh gencode.vM20/Esco1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco1-203.fa
bash RC.sh gencode.vM20/Esco1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco1-204.fa
bash RC.sh gencode.vM20/Esco1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco1-205.fa
bash RC.sh gencode.vM20/Esco1-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco1-209.fa
bash RC.sh gencode.vM20/Esco2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco2-201.fa
bash RC.sh gencode.vM20/Esco2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Esco2-203.fa
bash RC.sh gencode.vM20/EU599041-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/EU599041-201.fa
bash RC.sh gencode.vM20/EU599041-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/EU599041-203.fa
bash RC.sh gencode.vM20/EU599041-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/EU599041-204.fa
bash RC.sh gencode.vM20/Fbxl12os-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fbxl12os-201.fa
bash RC.sh gencode.vM20/Fbxl12os-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fbxl12os-202.fa
bash RC.sh gencode.vM20/Fezf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fezf1-201.fa
bash RC.sh gencode.vM20/Fezf2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fezf2-201.fa
bash RC.sh gencode.vM20/Fezf2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fezf2-202.fa
bash RC.sh gencode.vM20/Fezf2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fezf2-203.fa
bash RC.sh gencode.vM20/Fiz1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fiz1-201.fa
bash RC.sh gencode.vM20/Fiz1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fiz1-202.fa
bash RC.sh gencode.vM20/Fiz1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fiz1-203.fa
bash RC.sh gencode.vM20/Fiz1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fiz1-204.fa
bash RC.sh gencode.vM20/Fiz1-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fiz1-206.fa
bash RC.sh gencode.vM20/Fiz1-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Fiz1-208.fa
bash RC.sh gencode.vM20/Gfi1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gfi1-201.fa
bash RC.sh gencode.vM20/Gfi1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gfi1-202.fa
bash RC.sh gencode.vM20/Gfi1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gfi1-203.fa
bash RC.sh gencode.vM20/Gfi1b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gfi1b-201.fa
bash RC.sh gencode.vM20/Gfi1b-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gfi1b-204.fa
bash RC.sh gencode.vM20/Gli1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gli1-201.fa
bash RC.sh gencode.vM20/Gli2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gli2-201.fa
bash RC.sh gencode.vM20/Gli3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gli3-201.fa
bash RC.sh gencode.vM20/Glis1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis1-201.fa
bash RC.sh gencode.vM20/Glis1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis1-202.fa
bash RC.sh gencode.vM20/Glis2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis2-201.fa
bash RC.sh gencode.vM20/Glis2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis2-202.fa
bash RC.sh gencode.vM20/Glis2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis2-203.fa
bash RC.sh gencode.vM20/Glis3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis3-201.fa
bash RC.sh gencode.vM20/Glis3-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis3-202.fa
bash RC.sh gencode.vM20/Glis3-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis3-207.fa
bash RC.sh gencode.vM20/Glis3-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Glis3-209.fa
bash RC.sh gencode.vM20/Gm10323-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm10323-201.fa
bash RC.sh gencode.vM20/Gm10324-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm10324-201.fa
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bash RC.sh gencode.vM20/Gm11007-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm11007-202.fa
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bash RC.sh gencode.vM20/Gm12241-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm12241-201.fa
bash RC.sh gencode.vM20/Gm12258-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm12258-202.fa
bash RC.sh gencode.vM20/Gm12591-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm12591-201.fa
bash RC.sh gencode.vM20/Gm12845-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm12845-201.fa
bash RC.sh gencode.vM20/Gm13147-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm13147-202.fa
bash RC.sh gencode.vM20/Gm13212-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm13212-202.fa
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bash RC.sh gencode.vM20/Gm6182-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm6182-201.fa
bash RC.sh gencode.vM20/Gm6710-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm6710-202.fa
bash RC.sh gencode.vM20/Gm7072-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm7072-201.fa
bash RC.sh gencode.vM20/Gm7145-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm7145-201.fa
bash RC.sh gencode.vM20/Gm7240-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm7240-204.fa
bash RC.sh gencode.vM20/Gm7452-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm7452-202.fa
bash RC.sh gencode.vM20/Gm7696-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm7696-201.fa
bash RC.sh gencode.vM20/Gm8935-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm8935-201.fa
bash RC.sh gencode.vM20/Gm8935-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm8935-202.fa
bash RC.sh gencode.vM20/Gm9200-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gm9200-201.fa
bash RC.sh gencode.vM20/Gpatch8-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gpatch8-206.fa
bash RC.sh gencode.vM20/Gtf3a-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gtf3a-201.fa
bash RC.sh gencode.vM20/Gtf3a-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gtf3a-202.fa
bash RC.sh gencode.vM20/Gtf3a-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gtf3a-203.fa
bash RC.sh gencode.vM20/Gtf3a-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gtf3a-204.fa
bash RC.sh gencode.vM20/Gtf3a-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gtf3a-205.fa
bash RC.sh gencode.vM20/Gzf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gzf1-201.fa
bash RC.sh gencode.vM20/Gzf1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Gzf1-203.fa
bash RC.sh gencode.vM20/Hic1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hic1-201.fa
bash RC.sh gencode.vM20/Hic2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hic2-201.fa
bash RC.sh gencode.vM20/Hic2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hic2-202.fa
bash RC.sh gencode.vM20/Hinfp-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hinfp-205.fa
bash RC.sh gencode.vM20/Hinfp-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hinfp-207.fa
bash RC.sh gencode.vM20/Hivep1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hivep1-201.fa
bash RC.sh gencode.vM20/Hivep2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hivep2-201.fa
bash RC.sh gencode.vM20/Hivep2-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hivep2-204.fa
bash RC.sh gencode.vM20/Hivep2-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hivep2-205.fa
bash RC.sh gencode.vM20/Hivep3-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hivep3-202.fa
bash RC.sh gencode.vM20/Hivep3-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Hivep3-209.fa
bash RC.sh gencode.vM20/Ikzf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf1-201.fa
bash RC.sh gencode.vM20/Ikzf1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf1-202.fa
bash RC.sh gencode.vM20/Ikzf1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf1-203.fa
bash RC.sh gencode.vM20/Ikzf1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf1-204.fa
bash RC.sh gencode.vM20/Ikzf2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf2-201.fa
bash RC.sh gencode.vM20/Ikzf2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf2-202.fa
bash RC.sh gencode.vM20/Ikzf2-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf2-207.fa
bash RC.sh gencode.vM20/Ikzf3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf3-201.fa
bash RC.sh gencode.vM20/Ikzf4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf4-201.fa
bash RC.sh gencode.vM20/Ikzf4-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf4-203.fa
bash RC.sh gencode.vM20/Ikzf4-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf4-204.fa
bash RC.sh gencode.vM20/Ikzf4-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf4-208.fa
bash RC.sh gencode.vM20/Ikzf5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ikzf5-201.fa
bash RC.sh gencode.vM20/Insm1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Insm1-201.fa
bash RC.sh gencode.vM20/Insm2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Insm2-201.fa
bash RC.sh gencode.vM20/Jazf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Jazf1-201.fa
bash RC.sh gencode.vM20/Jazf1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Jazf1-202.fa
bash RC.sh gencode.vM20/Jazf1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Jazf1-203.fa
bash RC.sh gencode.vM20/Klf10-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf10-201.fa
bash RC.sh gencode.vM20/Klf10-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf10-202.fa
bash RC.sh gencode.vM20/Klf10-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf10-203.fa
bash RC.sh gencode.vM20/Klf11-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf11-201.fa
bash RC.sh gencode.vM20/Klf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf1-201.fa
bash RC.sh gencode.vM20/Klf12-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf12-201.fa
bash RC.sh gencode.vM20/Klf12-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf12-205.fa
bash RC.sh gencode.vM20/Klf13-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf13-201.fa
bash RC.sh gencode.vM20/Klf13-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf13-202.fa
bash RC.sh gencode.vM20/Klf14-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf14-201.fa
bash RC.sh gencode.vM20/Klf15-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf15-201.fa
bash RC.sh gencode.vM20/Klf15-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf15-202.fa
bash RC.sh gencode.vM20/Klf15-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf15-203.fa
bash RC.sh gencode.vM20/Klf15-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf15-204.fa
bash RC.sh gencode.vM20/Klf16-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf16-201.fa
bash RC.sh gencode.vM20/Klf17-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf17-201.fa
bash RC.sh gencode.vM20/Klf2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf2-201.fa
bash RC.sh gencode.vM20/Klf3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf3-201.fa
bash RC.sh gencode.vM20/Klf3-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf3-202.fa
bash RC.sh gencode.vM20/Klf4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf4-201.fa
bash RC.sh gencode.vM20/Klf5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf5-201.fa
bash RC.sh gencode.vM20/Klf6-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf6-201.fa
bash RC.sh gencode.vM20/Klf7-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf7-201.fa
bash RC.sh gencode.vM20/Klf7-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf7-202.fa
bash RC.sh gencode.vM20/Klf8-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf8-201.fa
bash RC.sh gencode.vM20/Klf8-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf8-202.fa
bash RC.sh gencode.vM20/Klf9-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Klf9-201.fa
bash RC.sh gencode.vM20/Maz-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Maz-201.fa
bash RC.sh gencode.vM20/Maz-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Maz-203.fa
bash RC.sh gencode.vM20/Maz-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Maz-204.fa
bash RC.sh gencode.vM20/Mbtps2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mbtps2-203.fa
bash RC.sh gencode.vM20/Mbtps2-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mbtps2-208.fa
bash RC.sh gencode.vM20/Mecom-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-202.fa
bash RC.sh gencode.vM20/Mecom-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-203.fa
bash RC.sh gencode.vM20/Mecom-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-204.fa
bash RC.sh gencode.vM20/Mecom-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-205.fa
bash RC.sh gencode.vM20/Mecom-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-206.fa
bash RC.sh gencode.vM20/Mecom-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-210.fa
bash RC.sh gencode.vM20/Mecom-212 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-212.fa
bash RC.sh gencode.vM20/Mecom-216 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mecom-216.fa
bash RC.sh gencode.vM20/Mtf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mtf1-201.fa
bash RC.sh gencode.vM20/Mtf1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mtf1-202.fa
bash RC.sh gencode.vM20/Mynn-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mynn-201.fa
bash RC.sh gencode.vM20/Mynn-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mynn-202.fa
bash RC.sh gencode.vM20/Mynn-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mynn-205.fa
bash RC.sh gencode.vM20/Mynn-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mynn-206.fa
bash RC.sh gencode.vM20/Mzf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mzf1-201.fa
bash RC.sh gencode.vM20/Mzf1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mzf1-202.fa
bash RC.sh gencode.vM20/Mzf1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mzf1-203.fa
bash RC.sh gencode.vM20/Mzf1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mzf1-204.fa
bash RC.sh gencode.vM20/Mzf1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Mzf1-205.fa
bash RC.sh gencode.vM20/Osr1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Osr1-201.fa
bash RC.sh gencode.vM20/Osr2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Osr2-201.fa
bash RC.sh gencode.vM20/Osr2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Osr2-203.fa
bash RC.sh gencode.vM20/Osr2-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Osr2-204.fa
bash RC.sh gencode.vM20/Ovol1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ovol1-201.fa
bash RC.sh gencode.vM20/Ovol2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ovol2-201.fa
bash RC.sh gencode.vM20/Ovol2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Ovol2-202.fa
bash RC.sh gencode.vM20/Patz1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Patz1-201.fa
bash RC.sh gencode.vM20/Patz1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Patz1-202.fa
bash RC.sh gencode.vM20/Patz1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Patz1-203.fa
bash RC.sh gencode.vM20/Patz1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Patz1-204.fa
bash RC.sh gencode.vM20/Patz1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Patz1-205.fa
bash RC.sh gencode.vM20/Patz1-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Patz1-206.fa
bash RC.sh gencode.vM20/Peg3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Peg3-201.fa
bash RC.sh gencode.vM20/Plag1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Plag1-201.fa
bash RC.sh gencode.vM20/Plagl1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Plagl1-201.fa
bash RC.sh gencode.vM20/Plagl1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Plagl1-202.fa
bash RC.sh gencode.vM20/Plagl1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Plagl1-203.fa
bash RC.sh gencode.vM20/Plagl2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Plagl2-201.fa
bash RC.sh gencode.vM20/Plagl2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Plagl2-202.fa
bash RC.sh gencode.vM20/Platr25-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Platr25-201.fa
bash RC.sh gencode.vM20/Platr25-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Platr25-202.fa
bash RC.sh gencode.vM20/Platr25-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Platr25-204.fa
bash RC.sh gencode.vM20/Platr25-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Platr25-207.fa
bash RC.sh gencode.vM20/Pogz-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Pogz-204.fa
bash RC.sh gencode.vM20/Prdm10-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm10-201.fa
bash RC.sh gencode.vM20/Prdm10-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm10-204.fa
bash RC.sh gencode.vM20/Prdm10-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm10-205.fa
bash RC.sh gencode.vM20/Prdm1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm1-201.fa
bash RC.sh gencode.vM20/Prdm1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm1-202.fa
bash RC.sh gencode.vM20/Prdm13-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm13-201.fa
bash RC.sh gencode.vM20/Prdm13-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm13-202.fa
bash RC.sh gencode.vM20/Prdm13-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm13-205.fa
bash RC.sh gencode.vM20/Prdm14-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm14-201.fa
bash RC.sh gencode.vM20/Prdm15-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm15-201.fa
bash RC.sh gencode.vM20/Prdm15-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm15-203.fa
bash RC.sh gencode.vM20/Prdm15-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm15-207.fa
bash RC.sh gencode.vM20/Prdm15-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm15-210.fa
bash RC.sh gencode.vM20/Prdm16-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm16-201.fa
bash RC.sh gencode.vM20/Prdm16-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm16-202.fa
bash RC.sh gencode.vM20/Prdm16-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm16-203.fa
bash RC.sh gencode.vM20/Prdm16-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm16-204.fa
bash RC.sh gencode.vM20/Prdm16-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm16-205.fa
bash RC.sh gencode.vM20/Prdm16-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm16-206.fa
bash RC.sh gencode.vM20/Prdm16-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm16-210.fa
bash RC.sh gencode.vM20/Prdm2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm2-201.fa
bash RC.sh gencode.vM20/Prdm4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm4-201.fa
bash RC.sh gencode.vM20/Prdm4-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm4-206.fa
bash RC.sh gencode.vM20/Prdm4-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm4-207.fa
bash RC.sh gencode.vM20/Prdm5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm5-201.fa
bash RC.sh gencode.vM20/Prdm5-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm5-202.fa
bash RC.sh gencode.vM20/Prdm5-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm5-203.fa
bash RC.sh gencode.vM20/Prdm5-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm5-204.fa
bash RC.sh gencode.vM20/Prdm6-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm6-201.fa
bash RC.sh gencode.vM20/Prdm6-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm6-202.fa
bash RC.sh gencode.vM20/Prdm6-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm6-203.fa
bash RC.sh gencode.vM20/Prdm6-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm6-204.fa
bash RC.sh gencode.vM20/Prdm8-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm8-201.fa
bash RC.sh gencode.vM20/Prdm8-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm8-202.fa
bash RC.sh gencode.vM20/Prdm9-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm9-206.fa
bash RC.sh gencode.vM20/Prdm9-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Prdm9-207.fa
bash RC.sh gencode.vM20/Rbak-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rbak-201.fa
bash RC.sh gencode.vM20/Rbak-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rbak-202.fa
bash RC.sh gencode.vM20/Rbak-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rbak-203.fa
bash RC.sh gencode.vM20/Repin1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Repin1-201.fa
bash RC.sh gencode.vM20/Repin1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Repin1-202.fa
bash RC.sh gencode.vM20/Repin1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Repin1-204.fa
bash RC.sh gencode.vM20/Repin1-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Repin1-207.fa
bash RC.sh gencode.vM20/Rest-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rest-201.fa
bash RC.sh gencode.vM20/Rest-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rest-202.fa
bash RC.sh gencode.vM20/Rex2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rex2-201.fa
bash RC.sh gencode.vM20/Rlf-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rlf-201.fa
bash RC.sh gencode.vM20/Rlf-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rlf-203.fa
bash RC.sh gencode.vM20/Rreb1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-201.fa
bash RC.sh gencode.vM20/Rreb1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-202.fa
bash RC.sh gencode.vM20/Rreb1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-203.fa
bash RC.sh gencode.vM20/Rreb1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-205.fa
bash RC.sh gencode.vM20/Rreb1-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-206.fa
bash RC.sh gencode.vM20/Rreb1-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-207.fa
bash RC.sh gencode.vM20/Rreb1-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-210.fa
bash RC.sh gencode.vM20/Rreb1-211 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rreb1-211.fa
bash RC.sh gencode.vM20/Rsl1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rsl1-201.fa
bash RC.sh gencode.vM20/Rslcan18-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Rslcan18-201.fa
bash RC.sh gencode.vM20/Sall1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sall1-201.fa
bash RC.sh gencode.vM20/Sall2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sall2-201.fa
bash RC.sh gencode.vM20/Sall2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sall2-202.fa
bash RC.sh gencode.vM20/Sall3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sall3-201.fa
bash RC.sh gencode.vM20/Sall4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sall4-201.fa
bash RC.sh gencode.vM20/Sall4-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sall4-202.fa
bash RC.sh gencode.vM20/Sall4-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sall4-203.fa
bash RC.sh gencode.vM20/Scrt1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Scrt1-201.fa
bash RC.sh gencode.vM20/Scrt1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Scrt1-202.fa
bash RC.sh gencode.vM20/Scrt2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Scrt2-201.fa
bash RC.sh gencode.vM20/Snai1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Snai1-201.fa
bash RC.sh gencode.vM20/Snai2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Snai2-201.fa
bash RC.sh gencode.vM20/Snai3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Snai3-201.fa
bash RC.sh gencode.vM20/Sp1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp1-201.fa
bash RC.sh gencode.vM20/Sp1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp1-202.fa
bash RC.sh gencode.vM20/Sp2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp2-201.fa
bash RC.sh gencode.vM20/Sp2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp2-202.fa
bash RC.sh gencode.vM20/Sp2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp2-203.fa
bash RC.sh gencode.vM20/Sp3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp3-201.fa
bash RC.sh gencode.vM20/Sp3-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp3-202.fa
bash RC.sh gencode.vM20/Sp3-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp3-204.fa
bash RC.sh gencode.vM20/Sp4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp4-201.fa
bash RC.sh gencode.vM20/Sp4-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp4-203.fa
bash RC.sh gencode.vM20/Sp5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp5-201.fa
bash RC.sh gencode.vM20/Sp6-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp6-201.fa
bash RC.sh gencode.vM20/Sp6-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp6-202.fa
bash RC.sh gencode.vM20/Sp7-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp7-201.fa
bash RC.sh gencode.vM20/Sp7-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp7-202.fa
bash RC.sh gencode.vM20/Sp8-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp8-201.fa
bash RC.sh gencode.vM20/Sp9-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Sp9-201.fa
bash RC.sh gencode.vM20/Spindoc-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Spindoc-201.fa
bash RC.sh gencode.vM20/Trerf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Trerf1-201.fa
bash RC.sh gencode.vM20/Trerf1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Trerf1-202.fa
bash RC.sh gencode.vM20/Trerf1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Trerf1-203.fa
bash RC.sh gencode.vM20/Trerf1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Trerf1-204.fa
bash RC.sh gencode.vM20/Trerf1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Trerf1-205.fa
bash RC.sh gencode.vM20/Trerf1-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Trerf1-206.fa
bash RC.sh gencode.vM20/Trit1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Trit1-201.fa
bash RC.sh gencode.vM20/Tshz1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Tshz1-201.fa
bash RC.sh gencode.vM20/Tshz1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Tshz1-202.fa
bash RC.sh gencode.vM20/Tshz2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Tshz2-201.fa
bash RC.sh gencode.vM20/Tshz2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Tshz2-202.fa
bash RC.sh gencode.vM20/Tshz2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Tshz2-203.fa
bash RC.sh gencode.vM20/Tshz3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Tshz3-201.fa
bash RC.sh gencode.vM20/Vezf1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Vezf1-201.fa
bash RC.sh gencode.vM20/Vezf1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Vezf1-202.fa
bash RC.sh gencode.vM20/Wiz-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wiz-202.fa
bash RC.sh gencode.vM20/Wiz-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wiz-203.fa
bash RC.sh gencode.vM20/Wiz-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wiz-204.fa
bash RC.sh gencode.vM20/Wiz-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wiz-207.fa
bash RC.sh gencode.vM20/Wiz-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wiz-210.fa
bash RC.sh gencode.vM20/Wiz-211 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wiz-211.fa
bash RC.sh gencode.vM20/Wt1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wt1-201.fa
bash RC.sh gencode.vM20/Wt1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wt1-202.fa
bash RC.sh gencode.vM20/Wt1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wt1-204.fa
bash RC.sh gencode.vM20/Wt1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wt1-205.fa
bash RC.sh gencode.vM20/Wt1-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Wt1-209.fa
bash RC.sh gencode.vM20/Yy1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Yy1-201.fa
bash RC.sh gencode.vM20/Yy2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Yy2-201.fa
bash RC.sh gencode.vM20/Zbtb11-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb11-201.fa
bash RC.sh gencode.vM20/Zbtb11-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb11-203.fa
bash RC.sh gencode.vM20/Zbtb1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb1-201.fa
bash RC.sh gencode.vM20/Zbtb12-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb12-201.fa
bash RC.sh gencode.vM20/Zbtb14-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb14-201.fa
bash RC.sh gencode.vM20/Zbtb14-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb14-202.fa
bash RC.sh gencode.vM20/Zbtb14-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb14-203.fa
bash RC.sh gencode.vM20/Zbtb16-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb16-201.fa
bash RC.sh gencode.vM20/Zbtb16-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb16-202.fa
bash RC.sh gencode.vM20/Zbtb17-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb17-201.fa
bash RC.sh gencode.vM20/Zbtb17-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb17-202.fa
bash RC.sh gencode.vM20/Zbtb17-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb17-205.fa
bash RC.sh gencode.vM20/Zbtb18-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb18-201.fa
bash RC.sh gencode.vM20/Zbtb18-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb18-202.fa
bash RC.sh gencode.vM20/Zbtb18-212 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb18-212.fa
bash RC.sh gencode.vM20/Zbtb20-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb20-201.fa
bash RC.sh gencode.vM20/Zbtb20-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb20-202.fa
bash RC.sh gencode.vM20/Zbtb20-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb20-203.fa
bash RC.sh gencode.vM20/Zbtb20-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb20-204.fa
bash RC.sh gencode.vM20/Zbtb20-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb20-205.fa
bash RC.sh gencode.vM20/Zbtb21-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb21-201.fa
bash RC.sh gencode.vM20/Zbtb21-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb21-202.fa
bash RC.sh gencode.vM20/Zbtb21-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb21-203.fa
bash RC.sh gencode.vM20/Zbtb21-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb21-204.fa
bash RC.sh gencode.vM20/Zbtb21-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb21-208.fa
bash RC.sh gencode.vM20/Zbtb2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb2-201.fa
bash RC.sh gencode.vM20/Zbtb2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb2-202.fa
bash RC.sh gencode.vM20/Zbtb2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb2-203.fa
bash RC.sh gencode.vM20/Zbtb24-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb24-201.fa
bash RC.sh gencode.vM20/Zbtb24-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb24-202.fa
bash RC.sh gencode.vM20/Zbtb25-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb25-201.fa
bash RC.sh gencode.vM20/Zbtb25-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb25-202.fa
bash RC.sh gencode.vM20/Zbtb25-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb25-204.fa
bash RC.sh gencode.vM20/Zbtb25-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb25-205.fa
bash RC.sh gencode.vM20/Zbtb26-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb26-201.fa
bash RC.sh gencode.vM20/Zbtb26-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb26-202.fa
bash RC.sh gencode.vM20/Zbtb3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb3-201.fa
bash RC.sh gencode.vM20/Zbtb32-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb32-201.fa
bash RC.sh gencode.vM20/Zbtb32-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb32-202.fa
bash RC.sh gencode.vM20/Zbtb33-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb33-201.fa
bash RC.sh gencode.vM20/Zbtb33-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb33-202.fa
bash RC.sh gencode.vM20/Zbtb34-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb34-201.fa
bash RC.sh gencode.vM20/Zbtb34-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb34-202.fa
bash RC.sh gencode.vM20/Zbtb37-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb37-201.fa
bash RC.sh gencode.vM20/Zbtb37-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb37-202.fa
bash RC.sh gencode.vM20/Zbtb37-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb37-203.fa
bash RC.sh gencode.vM20/Zbtb37-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb37-204.fa
bash RC.sh gencode.vM20/Zbtb37-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb37-206.fa
bash RC.sh gencode.vM20/Zbtb38-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb38-201.fa
bash RC.sh gencode.vM20/Zbtb38-212 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb38-212.fa
bash RC.sh gencode.vM20/Zbtb39-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb39-201.fa
bash RC.sh gencode.vM20/Zbtb40-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb40-201.fa
bash RC.sh gencode.vM20/Zbtb41-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb41-201.fa
bash RC.sh gencode.vM20/Zbtb41-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb41-202.fa
bash RC.sh gencode.vM20/Zbtb4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb4-201.fa
bash RC.sh gencode.vM20/Zbtb4-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb4-202.fa
bash RC.sh gencode.vM20/Zbtb4-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb4-203.fa
bash RC.sh gencode.vM20/Zbtb42-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb42-201.fa
bash RC.sh gencode.vM20/Zbtb42-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb42-203.fa
bash RC.sh gencode.vM20/Zbtb44-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb44-201.fa
bash RC.sh gencode.vM20/Zbtb44-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb44-202.fa
bash RC.sh gencode.vM20/Zbtb44-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb44-204.fa
bash RC.sh gencode.vM20/Zbtb44-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb44-205.fa
bash RC.sh gencode.vM20/Zbtb44-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb44-206.fa
bash RC.sh gencode.vM20/Zbtb45-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb45-201.fa
bash RC.sh gencode.vM20/Zbtb45-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb45-202.fa
bash RC.sh gencode.vM20/Zbtb45-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb45-205.fa
bash RC.sh gencode.vM20/Zbtb46-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb46-201.fa
bash RC.sh gencode.vM20/Zbtb46-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb46-205.fa
bash RC.sh gencode.vM20/Zbtb48-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb48-201.fa
bash RC.sh gencode.vM20/Zbtb48-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb48-202.fa
bash RC.sh gencode.vM20/Zbtb48-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb48-205.fa
bash RC.sh gencode.vM20/Zbtb48-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb48-206.fa
bash RC.sh gencode.vM20/Zbtb49-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb49-201.fa
bash RC.sh gencode.vM20/Zbtb49-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb49-202.fa
bash RC.sh gencode.vM20/Zbtb49-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb49-205.fa
bash RC.sh gencode.vM20/Zbtb49-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb49-207.fa
bash RC.sh gencode.vM20/Zbtb49-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb49-209.fa
bash RC.sh gencode.vM20/Zbtb49-210 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb49-210.fa
bash RC.sh gencode.vM20/Zbtb6-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb6-201.fa
bash RC.sh gencode.vM20/Zbtb6-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb6-202.fa
bash RC.sh gencode.vM20/Zbtb7a-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7a-201.fa
bash RC.sh gencode.vM20/Zbtb7a-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7a-202.fa
bash RC.sh gencode.vM20/Zbtb7a-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7a-203.fa
bash RC.sh gencode.vM20/Zbtb7b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7b-201.fa
bash RC.sh gencode.vM20/Zbtb7b-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7b-202.fa
bash RC.sh gencode.vM20/Zbtb7b-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7b-203.fa
bash RC.sh gencode.vM20/Zbtb7b-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7b-204.fa
bash RC.sh gencode.vM20/Zbtb7c-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7c-201.fa
bash RC.sh gencode.vM20/Zbtb7c-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb7c-202.fa
bash RC.sh gencode.vM20/Zbtb8b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb8b-201.fa
bash RC.sh gencode.vM20/Zbtb8b-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zbtb8b-202.fa
bash RC.sh gencode.vM20/Zeb1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb1-201.fa
bash RC.sh gencode.vM20/Zeb2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb2-201.fa
bash RC.sh gencode.vM20/Zeb2-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb2-202.fa
bash RC.sh gencode.vM20/Zeb2-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb2-203.fa
bash RC.sh gencode.vM20/Zeb2-212 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb2-212.fa
bash RC.sh gencode.vM20/Zeb2-213 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb2-213.fa
bash RC.sh gencode.vM20/Zeb2-214 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb2-214.fa
bash RC.sh gencode.vM20/Zeb2-215 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zeb2-215.fa
bash RC.sh gencode.vM20/Zfa-ps-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfa-ps-202.fa
bash RC.sh gencode.vM20/Zfat-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfat-204.fa
bash RC.sh gencode.vM20/Zfat-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfat-205.fa
bash RC.sh gencode.vM20/Zfhx3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfhx3-201.fa
bash RC.sh gencode.vM20/Zfhx3-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfhx3-204.fa
bash RC.sh gencode.vM20/Zfhx4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfhx4-201.fa
bash RC.sh gencode.vM20/Zfhx4-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfhx4-203.fa
bash RC.sh gencode.vM20/Zfhx4-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfhx4-205.fa
bash RC.sh gencode.vM20/Zfp101-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp101-201.fa
bash RC.sh gencode.vM20/Zfp101-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp101-204.fa
bash RC.sh gencode.vM20/Zfp105-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp105-201.fa
bash RC.sh gencode.vM20/Zfp108-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp108-201.fa
bash RC.sh gencode.vM20/Zfp108-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp108-202.fa
bash RC.sh gencode.vM20/Zfp108-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp108-203.fa
bash RC.sh gencode.vM20/Zfp109-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp109-202.fa
bash RC.sh gencode.vM20/Zfp109-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp109-203.fa
bash RC.sh gencode.vM20/Zfp110-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp110-201.fa
bash RC.sh gencode.vM20/Zfp110-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp110-205.fa
bash RC.sh gencode.vM20/Zfp111-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp111-201.fa
bash RC.sh gencode.vM20/Zfp111-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp111-203.fa
bash RC.sh gencode.vM20/Zfp11-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp11-201.fa
bash RC.sh gencode.vM20/Zfp112-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp112-201.fa
bash RC.sh gencode.vM20/Zfp112-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp112-202.fa
bash RC.sh gencode.vM20/Zfp112-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp112-204.fa
bash RC.sh gencode.vM20/Zfp113-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp113-201.fa
bash RC.sh gencode.vM20/Zfp114-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp114-201.fa
bash RC.sh gencode.vM20/Zfp114-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp114-203.fa
bash RC.sh gencode.vM20/Zfp119a-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp119a-201.fa
bash RC.sh gencode.vM20/Zfp119b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp119b-201.fa
bash RC.sh gencode.vM20/Zfp119b-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp119b-202.fa
bash RC.sh gencode.vM20/Zfp1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp1-201.fa
bash RC.sh gencode.vM20/Zfp120-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp120-201.fa
bash RC.sh gencode.vM20/Zfp1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp1-202.fa
bash RC.sh gencode.vM20/Zfp1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp1-203.fa
bash RC.sh gencode.vM20/Zfp12-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp12-201.fa
bash RC.sh gencode.vM20/Zfp12-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp12-202.fa
bash RC.sh gencode.vM20/Zfp12-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp12-203.fa
bash RC.sh gencode.vM20/Zfp128-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp128-201.fa
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bash RC.sh gencode.vM20/Zfp131-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp131-201.fa
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bash RC.sh gencode.vM20/Zfp131-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp131-206.fa
bash RC.sh gencode.vM20/Zfp13-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp13-201.fa
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bash RC.sh gencode.vM20/Zfp133-ps-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp133-ps-201.fa
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bash RC.sh gencode.vM20/Zfp141-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp141-203.fa
bash RC.sh gencode.vM20/Zfp14-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp14-202.fa
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bash RC.sh gencode.vM20/Zfp142-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp142-201.fa
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bash RC.sh gencode.vM20/Zfp142-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp142-208.fa
bash RC.sh gencode.vM20/Zfp143-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp143-201.fa
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bash RC.sh gencode.vM20/Zfp146-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp146-201.fa
bash RC.sh gencode.vM20/Zfp148-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp148-201.fa
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bash RC.sh gencode.vM20/Zfp160-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp160-201.fa
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bash RC.sh gencode.vM20/Zfp941-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp941-201.fa
bash RC.sh gencode.vM20/Zfp941-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp941-202.fa
bash RC.sh gencode.vM20/Zfp94-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp94-201.fa
bash RC.sh gencode.vM20/Zfp94-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp94-202.fa
bash RC.sh gencode.vM20/Zfp942-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp942-202.fa
bash RC.sh gencode.vM20/Zfp943-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp943-201.fa
bash RC.sh gencode.vM20/Zfp944-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp944-201.fa
bash RC.sh gencode.vM20/Zfp945-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp945-201.fa
bash RC.sh gencode.vM20/Zfp945-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp945-202.fa
bash RC.sh gencode.vM20/Zfp945-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp945-204.fa
bash RC.sh gencode.vM20/Zfp946-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp946-201.fa
bash RC.sh gencode.vM20/Zfp946-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp946-202.fa
bash RC.sh gencode.vM20/Zfp946-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp946-204.fa
bash RC.sh gencode.vM20/Zfp947-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp947-201.fa
bash RC.sh gencode.vM20/Zfp948-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp948-201.fa
bash RC.sh gencode.vM20/Zfp949-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp949-203.fa
bash RC.sh gencode.vM20/Zfp949-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp949-204.fa
bash RC.sh gencode.vM20/Zfp950-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp950-207.fa
bash RC.sh gencode.vM20/Zfp951-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp951-202.fa
bash RC.sh gencode.vM20/Zfp952-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp952-201.fa
bash RC.sh gencode.vM20/Zfp952-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp952-203.fa
bash RC.sh gencode.vM20/Zfp953-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp953-201.fa
bash RC.sh gencode.vM20/Zfp954-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp954-201.fa
bash RC.sh gencode.vM20/Zfp955a-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp955a-201.fa
bash RC.sh gencode.vM20/Zfp955b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp955b-201.fa
bash RC.sh gencode.vM20/Zfp956-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp956-201.fa
bash RC.sh gencode.vM20/Zfp956-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp956-202.fa
bash RC.sh gencode.vM20/Zfp958-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp958-201.fa
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bash RC.sh gencode.vM20/Zfp959-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp959-201.fa
bash RC.sh gencode.vM20/Zfp960-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp960-201.fa
bash RC.sh gencode.vM20/Zfp961-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp961-201.fa
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bash RC.sh gencode.vM20/Zfp961-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp961-206.fa
bash RC.sh gencode.vM20/Zfp963-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp963-201.fa
bash RC.sh gencode.vM20/Zfp964-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp964-201.fa
bash RC.sh gencode.vM20/Zfp964-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp964-203.fa
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bash RC.sh gencode.vM20/Zfp966-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp966-201.fa
bash RC.sh gencode.vM20/Zfp967-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp967-202.fa
bash RC.sh gencode.vM20/Zfp968-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp968-201.fa
bash RC.sh gencode.vM20/Zfp970-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp970-202.fa
bash RC.sh gencode.vM20/Zfp971-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp971-202.fa
bash RC.sh gencode.vM20/Zfp97-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp97-201.fa
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bash RC.sh gencode.vM20/Zfp979-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp979-201.fa
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bash RC.sh gencode.vM20/Zfp980-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp980-201.fa
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bash RC.sh gencode.vM20/Zfp981-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp981-201.fa
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bash RC.sh gencode.vM20/Zfp982-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp982-201.fa
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bash RC.sh gencode.vM20/Zfp984-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp984-201.fa
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bash RC.sh gencode.vM20/Zfp987-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp987-201.fa
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bash RC.sh gencode.vM20/Zfp990-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp990-201.fa
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bash RC.sh gencode.vM20/Zfp991-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp991-201.fa
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bash RC.sh gencode.vM20/Zfp994-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp994-201.fa
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bash RC.sh gencode.vM20/Zfp995-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfp995-205.fa
bash RC.sh gencode.vM20/Zfpm1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfpm1-201.fa
bash RC.sh gencode.vM20/Zfpm2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfpm2-201.fa
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bash RC.sh gencode.vM20/Zfr-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfr-201.fa
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bash RC.sh gencode.vM20/Zfx-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfx-201.fa
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bash RC.sh gencode.vM20/Zfy1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfy1-201.fa
bash RC.sh gencode.vM20/Zfy1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfy1-202.fa
bash RC.sh gencode.vM20/Zfy2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zfy2-201.fa
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bash RC.sh gencode.vM20/Zic1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zic1-201.fa
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bash RC.sh gencode.vM20/Zic3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zic3-201.fa
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bash RC.sh gencode.vM20/Zic3-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zic3-203.fa
bash RC.sh gencode.vM20/Zic4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zic4-201.fa
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bash RC.sh gencode.vM20/Zic4-209 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zic4-209.fa
bash RC.sh gencode.vM20/Zic4-211 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zic4-211.fa
bash RC.sh gencode.vM20/Zic5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zic5-201.fa
bash RC.sh gencode.vM20/Zik1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zik1-201.fa
bash RC.sh gencode.vM20/Zim1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zim1-201.fa
bash RC.sh gencode.vM20/Zim1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zim1-202.fa
bash RC.sh gencode.vM20/Zkscan1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan1-201.fa
bash RC.sh gencode.vM20/Zkscan1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan1-202.fa
bash RC.sh gencode.vM20/Zkscan1-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan1-203.fa
bash RC.sh gencode.vM20/Zkscan1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan1-204.fa
bash RC.sh gencode.vM20/Zkscan14-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan14-201.fa
bash RC.sh gencode.vM20/Zkscan16-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan16-201.fa
bash RC.sh gencode.vM20/Zkscan17-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan17-201.fa
bash RC.sh gencode.vM20/Zkscan17-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan17-202.fa
bash RC.sh gencode.vM20/Zkscan2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan2-201.fa
bash RC.sh gencode.vM20/Zkscan2-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan2-204.fa
bash RC.sh gencode.vM20/Zkscan3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan3-201.fa
bash RC.sh gencode.vM20/Zkscan3-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan3-203.fa
bash RC.sh gencode.vM20/Zkscan3-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan3-207.fa
bash RC.sh gencode.vM20/Zkscan4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan4-201.fa
bash RC.sh gencode.vM20/Zkscan4-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan4-202.fa
bash RC.sh gencode.vM20/Zkscan5-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan5-201.fa
bash RC.sh gencode.vM20/Zkscan5-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan5-202.fa
bash RC.sh gencode.vM20/Zkscan6-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan6-201.fa
bash RC.sh gencode.vM20/Zkscan6-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan6-202.fa
bash RC.sh gencode.vM20/Zkscan7-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan7-201.fa
bash RC.sh gencode.vM20/Zkscan7-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan7-204.fa
bash RC.sh gencode.vM20/Zkscan8-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan8-201.fa
bash RC.sh gencode.vM20/Zkscan8-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zkscan8-204.fa
bash RC.sh gencode.vM20/Zmat3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zmat3-201.fa
bash RC.sh gencode.vM20/Zmat3-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zmat3-203.fa
bash RC.sh gencode.vM20/Zmat4-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zmat4-201.fa
bash RC.sh gencode.vM20/Zmat4-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zmat4-202.fa
bash RC.sh gencode.vM20/Zmat4-206 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zmat4-206.fa
bash RC.sh gencode.vM20/Znf41-ps-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Znf41-ps-201.fa
bash RC.sh gencode.vM20/Zscan10-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan10-201.fa
bash RC.sh gencode.vM20/Zscan10-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan10-202.fa
bash RC.sh gencode.vM20/Zscan10-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan10-205.fa
bash RC.sh gencode.vM20/Zscan12-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan12-201.fa
bash RC.sh gencode.vM20/Zscan12-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan12-202.fa
bash RC.sh gencode.vM20/Zscan12-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan12-203.fa
bash RC.sh gencode.vM20/Zscan20-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan20-201.fa
bash RC.sh gencode.vM20/Zscan20-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan20-202.fa
bash RC.sh gencode.vM20/Zscan20-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan20-203.fa
bash RC.sh gencode.vM20/Zscan21-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan21-201.fa
bash RC.sh gencode.vM20/Zscan21-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan21-202.fa
bash RC.sh gencode.vM20/Zscan21-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan21-203.fa
bash RC.sh gencode.vM20/Zscan21-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan21-204.fa
bash RC.sh gencode.vM20/Zscan21-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan21-205.fa
bash RC.sh gencode.vM20/Zscan2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan2-201.fa
bash RC.sh gencode.vM20/Zscan22-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan22-201.fa
bash RC.sh gencode.vM20/Zscan22-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan22-202.fa
bash RC.sh gencode.vM20/Zscan22-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan22-203.fa
bash RC.sh gencode.vM20/Zscan22-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan22-204.fa
bash RC.sh gencode.vM20/Zscan25-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan25-201.fa
bash RC.sh gencode.vM20/Zscan25-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan25-202.fa
bash RC.sh gencode.vM20/Zscan26-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan26-201.fa
bash RC.sh gencode.vM20/Zscan26-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan26-202.fa
bash RC.sh gencode.vM20/Zscan29-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan29-202.fa
bash RC.sh gencode.vM20/Zscan4b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4b-201.fa
bash RC.sh gencode.vM20/Zscan4b-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4b-202.fa
bash RC.sh gencode.vM20/Zscan4c-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4c-201.fa
bash RC.sh gencode.vM20/Zscan4d-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4d-201.fa
bash RC.sh gencode.vM20/Zscan4e-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4e-202.fa
bash RC.sh gencode.vM20/Zscan4f-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4f-202.fa
bash RC.sh gencode.vM20/Zscan4-ps1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4-ps1-201.fa
bash RC.sh gencode.vM20/Zscan4-ps2-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4-ps2-201.fa
bash RC.sh gencode.vM20/Zscan4-ps3-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan4-ps3-201.fa
bash RC.sh gencode.vM20/Zscan5b-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan5b-201.fa
bash RC.sh gencode.vM20/Zscan5b-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zscan5b-203.fa
bash RC.sh gencode.vM20/Zup1-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zup1-201.fa
bash RC.sh gencode.vM20/Zup1-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zup1-202.fa
bash RC.sh gencode.vM20/Zup1-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zup1-204.fa
bash RC.sh gencode.vM20/Zup1-205 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zup1-205.fa
bash RC.sh gencode.vM20/Zup1-207 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zup1-207.fa
bash RC.sh gencode.vM20/Zup1-208 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zup1-208.fa
bash RC.sh gencode.vM20/Zxdb-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zxdb-201.fa
bash RC.sh gencode.vM20/Zxdc-201 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zxdc-201.fa
bash RC.sh gencode.vM20/Zxdc-202 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zxdc-202.fa
bash RC.sh gencode.vM20/Zxdc-203 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zxdc-203.fa
bash RC.sh gencode.vM20/Zxdc-204 /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.vM20/Zxdc-204.fa