python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3022.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_369.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_937.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_522.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2767.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2442.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_555.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_894.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_471.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_715.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_2085.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_785.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_4251.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_4933.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_883.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2837.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1804.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_450.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3718.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_682.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_626.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1988.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_1021.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1698.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_341.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_378.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_11.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_7.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_8.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_741.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_707.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_677.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_1050.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_818.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_608.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_11.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_14.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_6.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_2112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1733.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2038.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5787.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_663.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_447.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_414.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_264.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_197.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_766.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_555.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4776.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_252.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_224.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_656.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1024.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_1.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_744.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5548.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_204.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6366.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_897.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_0.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF737/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF737-201-vs-ChipExo_models_ZNF737.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_7.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4287.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_5.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_8.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_725.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_644.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_630.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_473.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_11.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_12.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_840.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_2.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_11.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_12.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_1068.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_259.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF649/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6852.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1225.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_794.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2523.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1179.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_1.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_829.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_4.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_5.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_6.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_7.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_8.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_718.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1195.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2803.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1636.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_864.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_422.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_353.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1367.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_810.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1543.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1518.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5685.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1846.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_570.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_565.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_527.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_9.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_559.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1394.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_11.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_12.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1337.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_802.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_243.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_515.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1059.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1794.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1678.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3531.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_3.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_9871.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_7.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2380.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_969.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_684.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4271.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_434.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_4.n_141.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_10088.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_12.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1163.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_316.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_7076.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3413.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7882.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_257.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_879.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_827.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_1127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_960.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1104.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2708.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_239.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_212.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_0.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_GR_models_ZBTB12.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_799.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_7469.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_4954.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_309.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_3.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_4.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_480.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4430.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_7.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6676.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3309.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3481.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_795.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_746.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1751.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_865.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_423.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1907.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1081.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4491.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_6030.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_2.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2424.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_859.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_2179.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_680.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_443.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_7.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_584.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_910.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1556.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1208.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_990.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_871.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_392.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_373.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_980.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_860.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_563.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_480.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_3374.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1735.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1775.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_426.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4368.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_2011.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1342.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_570.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_836.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_982.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_1022.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1421.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4839.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_894.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_500.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_6262.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1595.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_992.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_968.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_11.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_558.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_517.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3398.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_1880.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_4268.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_736.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_327.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_317.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_526.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7158.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_572.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_352.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2781.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_11.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2739.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1760.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_664.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_637.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_505.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_464.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_454.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_437.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4460.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2356.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3498.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1204.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6180.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4410.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_4202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2749.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_394.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_248.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1636.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_894.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_722.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1565.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4349.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_12.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_13.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_14.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_15.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_16.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_17.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_285.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8925.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1792.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_10021.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_706.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_503.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_208.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_587.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5862.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_802.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_381.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_345.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_544.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_545.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4438.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5899.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_950.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_622.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_486.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6705.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_1.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1077.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2816.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3292.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_595.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_398.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_8911.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_757.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_294.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_289.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_8363.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_550.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_244.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_11.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_9.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2353.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2862.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1556.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1496.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_1087.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_453.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1516.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_513.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_5610.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_954.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_804.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_471.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_1.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1764.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_714.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_221.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_1.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_10.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_9.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_206.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_476.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_493.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_13.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_501.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3814.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_302.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8539.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_223.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_5.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1463.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_481.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1284.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_973.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_12.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_13.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_14.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_15.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_16.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_18.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_460.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_229.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_455.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_508.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_350.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_24.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_25.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_26.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_27.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_300.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_249.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_637.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1754.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1519.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_2.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_485.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_3.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_918.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_99.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_5.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_815.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_8288.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_693.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_4551.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3316.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_225.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_3259.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_897.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_8.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4478.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_408.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6270.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_500.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4404.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2992.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_416.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_405.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_330.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2313.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1657.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_425.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_849.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_157.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_9946.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_6131.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_13.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_15.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_17.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3337.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2700.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2568.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_2057.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1394.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_161.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_201.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_240.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_325.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_3113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_885.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_303.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_283.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_6.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_7.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1715.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_592.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_139.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_7922.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_802.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_171.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_3.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_4.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-mean_shap_fixed/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-mean_shap_fixed/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5